PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G202100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 267aa    MW: 29387.5 Da    PI: 4.4262
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G202100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.59.1e-2291481128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknr.atksgyWkatgkd 89 
                         l pGf+F+P dee+v ++L +++ g+kl+le ++ e d +++ Pw+L  + +++++e +fF+  +  +   ++r++r     g W+ +g++
  Brast03G202100.1.p   9 LSPGFKFNPDDEEIVEYFLLRRLLGQKLPLEVMFLEDDPLRAPPWKLL-RDHGRTDEAFFFAAGHAINGGcSRRQKRtCEGGGCWEGQGQK 98 
                         579***************************7779999**********7.44456679999999888776437788884455899**99997 PP

                 NAM  90 kevlskkgel.............vglkktLvfykgrapkgektdWvmheyrl 128
                          +    +++l              + k +L f+  ++++g +t Wvmhey +
  Brast03G202100.1.p  99 GRKDGDTSNLrfvdpesggameiEWKKYVLNFHI-DDEEG-STGWVMHEYVV 148
                         6655542222445555555566467777899994.55554.9********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-253153IPR003441NAC domain
PROSITE profilePS5100522.9639168IPR003441NAC domain
PfamPF023652.3E-1711147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEAADVLGLS PGFKFNPDDE EIVEYFLLRR LLGQKLPLEV MFLEDDPLRA PPWKLLRDHG  60
RTDEAFFFAA GHAINGGCSR RQKRTCEGGG CWEGQGQKGR KDGDTSNLRF VDPESGGAME  120
IEWKKYVLNF HIDDEEGSTG WVMHEYVVTA PAGLVSPTSI RAYRIRLGEH GKKRKREAED  180
PCGGDEEAAR AAARQARAEE PDLAVQEHIS GASQFGFPDQ DCEVVTDGDD QPLQVDSFEF  240
EGLYAPDNTS WFEPAAADLG SHSAAP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230095.15e-64PREDICTED: NAC domain-containing protein 83-like
TrEMBLI1I6911e-135I1I691_BRADI; Uncharacterized protein
STRINGBRADI3G33680.11e-135(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.16e-07NAC domain containing protein 52